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Phage HMMs
		PF00078 rvt: Reverse transcriptase (RNA-dependent DNA polymerase) PF00239 Resolvase: Resolvase, N terminal domain PF00589 Phage_integrase: Phage integrase family PF00665 rve: Integrase core domain PF00959 Phage_lysozyme: Phage lysozyme PF01018 DUF1018: Protein of unknown function (DUF1018) PF01464 SLT: Transglycosylase SLT domain PF01473 CW_binding_1: Putative cell wall binding repeat PF01510 Amidase_2: N-acetylmuramoyl-L-alanine amidase PF01664 Reo_sigma1: Reovirus viral attachment protein sigma 1 PF01818 Translat_reg: Bacteriophage translational regulator PF01819 Levi_coat: Levivirus coat protein PF02061 Lambda_CIII: Lambda Phage CIII PF02303 Phage_DNA_bind: Helix-destabilizing protein PF02304 Phage_B: Scaffold protein B PF02305 Phage_F: Capsid protein (F protein) PF02306 Phage_G: Major spike protein (G protein) PF02316 Mu_DNA_bind: Mu DNA-binding domain PF02368 Big_2: Bacterial Ig-like domain (group 2) PF02413 Caudo_TAP: Domain of unknown function DUF144 PF02831 gpW: gpW PF02899 Phage_integr_N: Phage integrase, N-terminal SAM-like domain PF02914 Mu_transposase: Bacteriophage Mu transposase PF02924 HDPD: Bacteriophage lambda head decoration protein D PF02925 gpD: Bacteriophage scaffolding protein D PF03197 FRD2: Bacteriophage FRD2 protein PF03245 Phage_lysis: Bacteriophage lysis protein PF03335 Phage_fiber: Phage tail fiber repeat PF03354 Terminase_1: phage terminase, large subunit, putative PF03374 ANT: Phage antirepressor protein PF03406 Phage_fiber_2: Phage tail fiber repeat PF03420 Peptidase_U9: Prohead core protein protease, T4 family PF03431 RNA_replicase_B: RNA replicase, beta-chain PF03592 Terminase_2: Terminase small subunit PF03863 Phage_mat-A: Phage maturation protein PF03864 Phage_cap_E: Phage major capsid protein E PF03903 Phage_T4_gp36: Phage T4 tail fibre PF03906 Phage_T7_tail: Phage T7 tail fiber protein PF04233 Phage_Mu_F: Phage Mu protein F like protein PF04404 ERF: ERF superfamily PF04447 DUF550: Protein of unknown function (DUF550) PF04448 DUF551: Protein of unknown function (DUF551) PF04466 Terminase_3: Phage terminase large subunit PF04492 Phage_rep_O: Bacteriophage replication protein O PF04517 Microvir_lysis: Microvirus lysis protein (E), C terminus PF04531 Phage_holin_1: Bacteriophage holin PF04550 Phage_holin_2: Phage holin family 2 PF04586 Caudo_protease: Caudovirus prohead protease PF04606 Ogr_Delta: Phage transcriptional activator, Ogr/Delta PF04630 Phage_tail: Phage major tail protein PF04687 Microvir_H: Microvirus H protein (pilot protein) PF04688 Phage_holin: Phage lysis protein, holin PF04717 Phage_base_V: Phage-related baseplate assembly protein PF04726 Microvir_J: Microvirus J protein PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator PF04860 Phage_portal: Phage portal protein PF04865 Baseplate_J: Baseplate J-like protein PF04883 DUF646: Bacteriophage protein of unknown function (DUF646) PF04936 DUF658: Protein of unknown function (DUF 658) PF04984 Phage_sheath_1: Phage tail sheath protein PF04985 Phage_tube: Phage tail tube protein FII PF05012 DOC: Prophage maintenance system killer protein PF05017 TMP: TMP repeat PF05037 DUF669: Protein of unknown function (DUF669) PF05065 Phage_capsid: Phage capsid family PF05069 Phage_tail_S: Phage virion morphogenesis family PF05100 Phage_tail_L: Phage minor tail protein L PF05102 Holin_BlyA: holin, BlyA family PF05105 Phage_holin_4: Holin family PF05106 Phage_holin_3: Phage holin family (Lysis protein S) PF05119 Terminase_4: Phage terminase, small subunit PF05125 Phage_cap_P2: Phage major capsid protein, P2 family PF05126 Phage_min_cap: Phage minor capsid protein PF05133 Phage_prot_Gp6: Phage portal protein, SPP1 Gp6-like PF05135 Phage_QLRG: Phage QLRG family, putative DNA packaging PF05136 Phage_portal_2: Phage portal protein, lambda family PF05144 Phage_CRI: Phage replication protein CRI PF05155 Phage_X: Phage X family PF05263 DUF722: Protein of unknown function (DUF722) PF05268 GP38: Phage tail fibre adhesin Gp38 PF05269 Phage_CII: Bacteriophage CII protein PF05289 BLYB: Borrelia hemolysin accessory protein [holin] PF05322 NinE: NINE Protein PF05339 DUF739: Protein of unknown function (DUF739) PF05352 Phage_connector: Phage Connector (GP10) PF05354 Phage_attach: Phage Head-Tail Attachment PF05356 Phage_Coat_B: Phage Coat protein B PF05357 Phage_Coat_A: Phage Coat Protein A PF05358 DicB: DicB protein PF05367 Phage_endo_I: Phage endonuclease I PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8 PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein PF05435 Phi-29_GP3: Phi-29 DNA terminal protein GP3 PF05441 Micro_A_star: Microvirus A* protein PF05442 Microvirus_A: Microvirus A protein PF05449 DUF754: Protein of unknown function (DUF754) PF05464 Phi-29_GP4: Phi-29-like late genes activator (early protein GP4) PF05489 Phage_tail_X: Phage Tail Protein X PF05521 Phage_H_T_join: Phage head-tail joining protein PF05565 Sipho_Gp157: Siphovirus Gp157 PF05595 DUF771: Domain of unknown function (DUF771) PF05666 Fels1: Fels-1 Prophage Protein-like PF05707 Zot: Zonular occludens toxin (Zot) PF05766 NinG: Bacteriophage Lambda NinG protein PF05772 NinB: NinB protein PF05798 Phage_FRD3: Bacteriophage FRD3 protein PF05810 NinF: NinF protein PF05840 Phage_GPA: Bacteriophage replication gene A protein (GPA) PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam) PF05876 Terminase_GpA: Phage terminase large subunit (GpA) PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16) PF05908 DUF867: Protein of unknown function (DUF867) PF05926 Phage_GPL: Phage head completion protein (GPL) PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA) PF05939 Phage_min_tail: Phage minor tail protein PF05944 Phage_term_smal: Phage small terminase subunit PF05946 TcpA: Toxin-coregulated pilus subunit TcpA PF05954 Phage_GPD: Phage late control gene D protein (GPD) PF05973 Gp49: Phage derived protein Gp49-like (DUF891) PF06019 Phage_30_8: Phage GP30.8 protein PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like) PF06064 Gam: Host-nuclease inhibitor protein Gam PF06074 DUF935: Protein of unknown function (DUF935) PF06085 Rz1: Lipoprotein Rz1 precursor PF06116 RinB: Transcriptional activator RinB PF06120 Phage_HK97_TLTM: Tail length tape measure protein PF06141 Phage_tail_U: Phage minor tail protein U PF06147 DUF968: Protein of unknown function (DUF968) PF06152 Phage_min_cap2: Phage minor capsid protein 2 PF06158 Phage_E: Phage tail protein E PF06190 DUF994: Protein of unknown function (DUF994) PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51 PF06199 Phage_tail_2: Phage major tail protein 2 PF06222 Phage_TAC: Phage tail assembly chaperone PF06223 Phage_tail_T: Minor tail protein T PF06260 DUF1024: Protein of unknown function (DUF1024) PF06264 DUF1026: Protein of unknown function (DUF1026) PF06274 Mu-like_GpL: Bacteriophage Mu tail sheath protein (GpL) PF06275 DUF1031: Protein of unknown function (DUF1031) PF06291 Lambda_Bor: Bor protein PF06301 Lambda_Kil: Bacteriophage lambda Kil protein PF06322 Phage_NinH: Phage NinH protein PF06323 Phage_antiter_Q: Phage antitermination protein Q PF06340 TcpF: Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) PF06341 DUF1056: Protein of unknown function (DUF1056) PF06356 DUF1064: Protein of unknown function (DUF1064) PF06378 DUF1071: Protein of unknown function (DUF1071) PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein PF06528 Phage_P2_GpE: phage tail protein, P2 GpE family PF06530 Phage_antitermQ: Phage antitermination protein Q PF06531 DUF1108: Protein of unknown function (DUF1108) PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor PF06563 DUF1125: Protein of unknown function (DUF1125) PF06591 Phage_T4_Ndd: T4-like phage nuclear disruption protein (Ndd) PF06600 DUF1140: Protein of unknown function (DUF1140) PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein PF06714 Gp5_OB: Gp5 N-terminal OB domain PF06715 Gp5_C: Gp5 C-terminal repeat (3 copies) PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7 PF06737 Transglycosylas: Transglycosylase-like domain PF06763 Minor_tail_Z: Prophage minor tail protein Z (GPZ) PF06791 TMP_2: Prophage tail length tape measure protein PF06805 Lambda_tail_I: Bacteriophage lambda tail assembly protein I PF06806 DUF1233: Putative excisionase (DUF1233) PF06810 Phage_GP20: Phage minor structural protein GP20 PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus PF06841 Phage_T4_gp19: T4-like virus tail tube protein gp19 PF06854 Phage_Gp15: Bacteriophage Gp15 protein PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein PF06891 P2_Phage_GpR: P2 phage tail completion protein R (GpR) PF06892 Phage_CP76: Phage regulatory protein CII (CP76) PF06893 Phage_Mu_P: Bacteriophage Mu P protein PF06894 Phage_lambd_GpG: Bacteriophage lambda minor tail protein (GpG) PF06895 DUF1267: Protein of unknown function (DUF1267) PF06896 DUF1268: Protein of unknown function (DUF1268) PF06900 DUF1270: Protein of unknown function (DUF1270) PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein PF06926 Rep_Org_C: Putative replisome organiser protein C-terminus PF06946 Phage_holin_5: Phage holin PF06950 DUF1293: Protein of unknown function (DUF1293) PF06992 Phage_lambda_P: Replication protein P PF06995 Phage_P2_GpU: Phage P2 GpU PF06997 DUF1306: Protein of unknown function (DUF1306) PF07022 Phage_CI_repr: Bacteriophage CI repressor protein PF07026 DUF1317: phage conserved hypothetical protein PF07030 DUF1320: phage conserved hypothetical protein PF07066 Phage_Lacto_M3: Lactococcus phage M3 protein PF07067 DUF1340: Protein of unknown function (DUF1340) PF07068 Gp23: Major capsid protein Gp23 PF07083 DUF1351: Protein of unknown function (DUF1351) PF07097 DUF1359: Protein of unknown function (DUF1359) PF07102 DUF1364: Protein of unknown function (DUF1364) PF07104 DUF1366: Protein of unknown function (DUF1366) PF07105 DUF1367: Protein of unknown function (DUF1367) PF07108 PipA: PipA protein PF07116 DUF1372: Protein of unknown function (DUF1372) PF07125 DUF1378: Protein of unknown function (DUF1378) PF07129 DUF1381: Protein of unknown function (DUF1381) PF07131 DUF1382: Protein of unknown function (DUF1382) PF07141 Phage_term_sma: Putative bacteriophage terminase small subunit PF07157 DNA_circ_N: DNA circulation protein N-terminus PF07193 DUF1408: Protein of unknown function (DUF1408) PF07211 DUF1417: Protein of unknown function (DUF1417) PF07212 Hyaluronidase: Hyaluronidase protein (HylP) PF07230 Phage_T4_Gp20: Bacteriophage T4-like capsid assembly protein (Gp20) PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein PF07360 DUF1483: Protein of unknown function (DUF1483) PF07374 DUF1492: Protein of unknown function (DUF1492) PF07384 DUF1497: Protein of unknown function (DUF1497) PF07409 GP46: Phage protein GP46 PF07410 Phage_Gp111: Streptococcus thermophilus bacteriophage Gp111 protein PF07438 DUF1514: Protein of unknown function (DUF1514) PF07455 Psu: Phage polarity suppression protein (Psu) PF07459 CTX_RstB: CTX phage RstB protein PF07471 Phage_Nu1: Phage DNA packaging protein Nu1 PF07484 Collar: Phage Tail Collar Domain PF07505 Gp37_Gp68: Phage protein Gp37/Gp68 PF07508 Recombinase: Recombinase PF07570 Protein of unknown function (DUF1545) PF07634 RtxA repeat PF07761 DUF1617: Protein of unknown function (DUF1617) PF07768 PVL_ORF50: PVL ORF-50-like family PF07772 TP901-1_ORF40: TP901-1 ORF40-like protein PF07825 Exc: Excisionase-like protein PF07852 DUF1642: Protein of unknown function (DUF1642) PF07868 DUF1655: Protein of unknown function (DUF1655) PF07874 DUF1660: Prophage protein (DUF1660) PF07880 T4_gp9_10: Bacteriophage T4 gp9/10-like protein PF07902 Gp58: gp58-like protein PF07921 Fibritin_C: Fibritin C-terminal region PF08010 Phage_30_3: Bacteriophage protein GP30.3 PF08133 Nuclease_act: Anticodon nuclease activator family TIGR00616 rect: recombinase, phage RecT family TIGR01446 DnaD_dom: DnaD and phage-associated domain TIGR01537 portal_HK97: phage portal protein, HK97 family TIGR01538 portal_SPP1: phage portal protein, SPP1 family TIGR01539 portal_lambda: phage portal protein, lambda family TIGR01540 portal_PBSX: phage portal protein, PBSX family TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family TIGR01542 A118_put_portal: phage portal protein, putative, A118 family TIGR01543 proheadase_HK97: phage prohead protease, HK97 family TIGR01547 phage_term_2: phage terminase, large subunit, PBSX family TIGR01551 major_capsid_P2: phage major capsid protein, P2 family TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family TIGR01555 phge_rel_HI1409: phage-related protein, HI1409 family TIGR01558 sm_term_P27: phage terminase, small subunit, putative, P27 family TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) TIGR01563 gp16_SPP1: phage head-tail adaptor, putative TIGR01592 holin_SPP1: holin, SPP1 family TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin TIGR01594 holin_lambda: phage holin, lambda family TIGR01598 holin_phiLC3: holin, phage phi LC3 family TIGR01600 phage_tail_L: phage minor tail protein L TIGR01603 maj_tail_phi13: phage major tail protein, phi13 family TIGR01606 holin_BlyA: holin, BlyA family TIGR01610 phage_O_Nterm: phage replication protein O, N-terminal domain TIGR01611 tail_tube: phage major tail tube protein TIGR01613 primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain TIGR01618 phage_P_loop: phage nucleotide-binding protein TIGR01629 rep_II_X: phage/plasmid replication protein, gene II/X family TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain TIGR01633 phi3626_gp14_N: phage putative tail component, N-terminal domain TIGR01634 tail_P2_I: phage tail protein I TIGR01635 tail_comp_S: phage virion morphogenesis protein TIGR01636 phage_rinA: phage transcriptional regulator, RinA family TIGR01637 phage_arpU: phage transcriptional regulator, ArpU family TIGR01641 phageSPP1_gp7: phage putative head morphogenesis protein, SPP1 gp7 family TIGR01644 phage_P2_V: phage baseplate assembly protein V TIGR01665 put_anti_recept: phage minor structural protein, N-terminal region TIGR01669 phage_XkdX: phage uncharacterized protein, XkdX family TIGR01671 phage_TIGR01671: phage conserved hypothetical protein TIGR01671 TIGR01673 holin_LLH: phage holin, LL-H family TIGR01674 phage_lambda_G: phage minor tail protein G TIGR01712 phage_N6A_met: phage N-6-adenine-methyltransferase TIGR01714 phage_rep_org_N: phage replisome organizer, putative, N-terminal region TIGR01715 phage_lam_T: phage tail assembly protein T TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region TIGR01913 bet_lambda: phage recombination protein Bet TIGR02126 phgtail_TP901_1: phage major tail protein, TP901-1 family TIGR02215 phage_chp_gp8: phage conserved hypothetical protein, phiE125 gp8 family TIGR02216 phage_TIGR02216: phage conserved hypothetical protein TIGR02217 chp_TIGR02217: conserved hypothetical protein TIGR02217 TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 TIGR02219 phage_NlpC_fam: putative phage cell wall peptidase, NlpC/P60 family TIGR02220 phg_TIGR02220: phage conserved hypothetical protein, C-terminal domain TIGR02224 recomb_XerC: tyrosine recombinase XerC TIGR02225 recomb_XerD: tyrosine recombinase XerD TIGR02242 tail_TIGR02242: phage tail protein domain TIGR02243 TIGR02243: conserved hypothetical protein TIGR02249 integrase_gron: integron integrase TIGR02307 RNA_lig_RNL2: RNA ligase, Rnl2 family TIGR02308 RNA_lig_T4_1: RNA ligase, T4 RnlA family
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