Phage_Finder
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SYSTEM REQUIREMENTS
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The programs should run on all Unix
platforms. It has been tested on Linux (Redhat, Suse and
Debian) and Mac OS X 10.3/10.4 operating systems. It has not
been tested on all Unix platforms.
SOFTWARE
REQUIREMENTS/DEPENDENCIES
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Phage_Finder.pl requires the following
programs or packages for full functionality:
PERL
version 5.8.5 or later
NCBI BLASTALL version 2.2.10 or later
Linux
Mac OS X (Apple/Genentech optimized NCBI BLAST)
WUBLAST
2.0
HMMSEARCH
tRNAscan-SE
Aragorn
version 1.1.6
FASTA33, MUMMER (if you want to use these to find attachment
sites)
Math::Round
PERL module [INCLUDED in this distribution]
PHAGE::Phage_subs PERL module [INCLUDED in this
distribution]
Getopt::Std [should be installed with PERL]
XGRAPH
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